Hardcore I can see your point, but you must remember that you are going to build an engine to withstand 1 bar of boost (for arguments sake) and so if it gets from no boost to 1 bar in 3,000 revs (super) of 500 revs (turbo) the engine is still going to see 1 bar in the end. If the engine is built to withstand it, there will be no problem.
Your example with the paper is not really valid, because:
a) When you do snap your hands apart, you will have applied much more force than just applying pressure gradually due to the sudden movement. The paper has torn because of more force, not because of a sudden force!
b) In terms of an engine, boost from a turbo does happen gradually. Lets say in our example that our turbo provides no boost below 3,000rpm, starts to spool at 3,000rpm, and is blowing fully by 3,500rpm. A typical turbo setup.
Lets say it takes half a second to reach full boost - in the 3k to 3.5k rev range, the engine has completed between 25 and 29 complete combustion cycles. Each time with progressivly more boost. Thats fairly linear and gradual.
As you said though, the transmission suffers a bit. Thats another can of worms though.