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Firstly, welcome to the forum.
You would be much better running the front and sub from and amp/2 amps (one for the speakers, one for the sub), you'll notice a big improvement from simply running them from the head unit.
Depending on which method you choose, you will probably need either 2 x 2...
Think it depends on graphics card and RAM.
Could be worth checking out the Compiz FAQ, as it looks like there are some known HW problems. Might not be what you're after though.
Anyone tried out Docky yet?